SciTransfer
BAXERNA 2.0 · Project

AI-Powered mRNA Vaccine Pipeline for Drug-Resistant Bacterial Infections

healthTestedTRL 5

Imagine trying to find a needle in a haystack, where the needle is the exact part of a bacteria that the immune system can recognize. This project uses a high-tech 'metal detector' (mass spectrometry and AI) to find those targets much faster. Once found, they use mRNA technology—similar to the COVID-19 shots—to teach the body how to fight stubborn bacteria like Tuberculosis.

By the numbers
10- to 50-fold
reduction in input material requirements
2
multiplier for peptide identification rates
The business problem

What needed solving

Current bacterial vaccines fail because we lack known antigens and cannot trigger strong cellular immune responses. This is critical for treating antimicrobial-resistant (AMR) bacteria that hide inside cells.

The solution

What was built

An automated immunopeptidomics pipeline using timsTOF mass spectrometry and AI tools to identify bacterial epitopes. They also developed GMP-compliant mRNA vaccine formulations with innovative adjuvants.

Audience

Who needs this

mRNA vaccine biotech companiesPharmaceutical firms specializing in AMRTropical disease research institutesContract Development and Manufacturing Organizations (CDMOs)
Business applications

Who can put this to work

Pharmaceuticals
enterprise
Target: Vaccine Developer

If you are a vaccine developer dealing with the difficulty of finding antigens for intracellular bacteria — this project developed an immunopeptidomics pipeline that reduces input material requirements 10- to 50-fold. This allows for faster identification of targets for mRNA vaccines against pathogens like Acinetobacter baumannii.

Biotechnology
mid-size
Target: mRNA Platform Provider

If you are an mRNA platform provider dealing with low cellular immune responses in bacterial vaccines — this project developed innovative adjuvants and lipid nanoparticles to strengthen adaptive immunity. This enables the creation of vaccines that trigger both humoral and cellular responses.

Public Health / Tropical Medicine
SME
Target: Local Vaccine Manufacturer

If you are a local manufacturer dealing with high costs and stability issues for tropical disease vaccines — this project developed low-cost production methods and GMP standards for mRNA vaccines. This facilitates the local production of vaccines for neglected diseases like Buruli ulcer.

Frequently asked

Quick answers

What is the cost of implementing this vaccine pipeline?

Based on available project data, specific costs are not provided, but the project is pursuing low-cost production methods to enable local manufacturing.

Can this be scaled to industrial production?

Yes, the project specifies that vaccine production will be conducted according to GMP standards to ensure industrial viability.

How is the intellectual property or licensing handled?

Based on available project data, specific licensing terms are not mentioned, though the consortium includes 3 industry partners and 3 SMEs.

What is the timeline for clinical availability?

The project runs from 2023-07-01 to 2028-06-30, with a lead candidate for Tuberculosis planned for a first-in-human Phase I clinical trial.

How does this integrate with existing lab equipment?

The pipeline is optimized for timsTOF mass spectrometers and utilizes AI-powered tools for data acquisition.

Consortium

Who built it

The consortium is well-balanced for translation, consisting of 11 partners across 6 countries. With a 27% industry ratio (including 3 SMEs), there is a strong bridge between the 5 universities and 2 research centers and the commercial market, ensuring that the GMP production and clinical trial goals are grounded in industrial reality.

How to reach the team

Contact VIB VZW in Belgium for partnership opportunities regarding the immunopeptidomics pipeline.

Next steps

Talk to the team behind this work.

Contact us to connect with the BAXERNA 2.0 consortium for licensing the AI-powered screening tools.

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